Profiled Publications 
Pruneda-Paz, J.L., Breton, G., Para, A., Kay, S.A. (2009) A functional genomics approach reveals CHE as a novel
component of the Arabidopsis circadian clock. Science 323:1481-1485.
Liu, A., Welsh, D.K., Ko, C., Tran, H., Zhang, E., Priest, A., Burr, E., Singer, O., Meeker, K., Verma, I., Doyle, F., Takahashi, J. and Kay, S.A. (2007) Intercellular coupling confers robustness against mutations in the SCN circadian clock network. Cell 129:605-16.
Sato, T.K., Panda, S., Miraglia, L.J., Reyes, T.M., Rudic, R.D., McNamara, P., Naik, K.A., FitzGerald, G.A., Kay, S.A.,
Hogenesch, J.B. (2004) A functional genomics strategy reveals Rora as a component of the mammalian circadian clock.
Neuron 43:527-537.
Imaizumi, T., Tran, H.G., Swartz, T.E., Briggs, W.R., Kay, S.A. (2003) FKF1 is critical for photoperiodic-specific light
signaling in Arabidopsis. Nature 426:302-306.
Yanovsky, M.J. and Kay, S.A. (2002) Molecular basis of seasonal time measurement in Arabidopsis. Nature 419:308-
312.
Alabadi, D., Oyama, T., Yanovsky, M., Harmon, F.G., Mas, P., Kay, S.A. (2001) Reciprocal regulation between TOC1 and
LHY/CCA1 within the Arabidopsis circadian clock. Science 293:880-883.
Harmer, S.L., Hogenesch, J.B., Straume, M., Chang, H-S., Zhu, T., Wang, X., Kreps, J.A., Kay, S.A. (2000) Orchestrated
transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-2113.
Darlington, T., Wager-Smith, K., Ceriani, F., Staknis, D., Gekakis, N., Steeves, T., Weitz, C., Takahashi, J., Kay, S.A.
(1998) Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim. Science 280:1599-1603
Plautz, J., Kaneko, M., Hall, J., Kay, S.A. (1997) Independent photoreceptive circadian clocks throughout Drosophila.
Science 278:1632-1635.
Millar, A.J., Carre, I., Strayer, C., Chua, N-H., Kay, S.A. (1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267:1161-1163.
Complete Publication List
178. Nusinow, D.A., Helfer, A., Hamilton, E.E., King, J.J., Imaizumi, T., Schultz, T.F., Farré, E.M., Kay, S.A. The ELF4-ELF3-LUX Complex Links the Circadian Clock to Diurnal Control of Hypocotyl Growth. Nature 2011,doi:10.1038/nature10182
177. Sawa, M. and Kay, S.A. GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 2011 EE June, PMID: 21709243
176. Cole, B., Kay, S.A., Chory, J. Automated analysis of hypocotyls growth dynamics during shade avoidance in Arabidopsis. Plant J. 2011 65(6) 991-1000. PMID: 21288269
175. Helfer, A., Nusinow, D.A., Chow, B.Y., Gehrke, A.R., Bulyk, M.L., Kay, S.A. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr. Biol. 2011 21(2):126-33. PMID: 21236673
174. Hirota, T. Lee, J.W., Lewis, W.G., Zhang,E.E., Breton,G., Liu, X., Garcia, M., Peters, E.C., Etchegaray, J-P., Traver, D., Schultz, P.G., Kay, S.A. (2010) High-Throughput chemical screen identifies a novel potent modulator of cellular circadian rhythms and reveals CKIα as a clock regulatory kinase. PLoS Biology 8(12) e1000559 PMID: 21179498
173. Ko, C.H., Yamada, Y.R., Welsh, D.K., Buhr, E.D., Liu, A.C., Zhang, E.E., Ralph, M.R., Kay, S.A., Forger, D.B., Takahashi, J.S. (2010) Emergence of noise-induced oscillations in the central circadian pacemaker. PLoS Biol. Oct 12;8 (10):e1000513. PMID: 20967239
172. Zhang, E.E. and Kay, S.A. (2010) Clocks not winding down: unraveling circadian networks. Nature Reviews Mol Cell Biol 11:764-776 PMID: 20966970
171. Zhang, E.E., Liu, Y., Dentin, R., Pongsawakul, P.Y., Liu A.C., Hirota, T., Nusinow, D.A., Sun, X., Landais, S., Kodama, Y., Brenner, D.A., Montminy, M.R., Kay, S.A. (2010) Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis. Nature Med. 16(10):1152-1156. PMID: 20852621
170. Doherty, C.J., Kay, S.A. (2010) Circadian control of global gene expression patterns. Annu Rev Genet. Epub PMID: 20809800
169. Pruneda-Paz, J.L. and Kay, S.A. (2010) An expanding universe of circadian networks in higher plants. Trends in Plant
Science 15:259-265. PMID: 20382065 Review
168. Baudry, A., Ito, S., Song, Y.H., Strait, A.A. Kiba, T., Lu, S., Henriques, R., Pruneda-Paz, J.L. Chua, N-H., Tobin,
E.M.,Kay, S.A., Imaizum, T. (2010) F-Box proteins FKF1 and LKP2 act in concert with ZEITLUPE to control
Arabidopsis clock progression. The Plant Cell 22:606-622. PMID: 20354196
167. Welsh, D.K., Takahashi, J.S., Kay, S.A. (2010) Suprachiasmatic nucleus: Cell autonomy and network properties.
Annu. Rev. Physiol., 72, Mar 2010 PMID: 20148688 Review
166. Hirota, T., Kay, S.A. (2009) High-throughput screening and chemical biology: New approaches to the circadian clock
mechanism. Chem. Biol. 16:921-7. PMID: 20148688 PMC: 2835411
165. Zhang, E.E., Liu, A.C., Hirota, T., Miraglia, L.J., Welch, G., Pongsawakul, P.Y., Liu, X., Atwood, A., Huss 3rd , J.W.,
Janes, J., Su, A.I., Hogenesch, J.B., Kay, S.A. (2009) A genome-wide RNAi screen for modifiers of the circadian clock
in human cells. Cell 139:199-210. PMID: 19765810 PMC: 2777987
164. Mirsky, H.P., Liu, A.C., Welsh, D.K., Kay, S.A., Doyle III, F.J. (2009) A model of the cell-autonomous mammalian circadian clock. Proc Natl Acad Sci USA. 106(27):11107-1111. PMID: 19549830
163. Pan, Y., Michael, T.P., Hudson, M.E., Kay, S.A., Chory, J., Schuler, M.A. (2009) Cytochrome p450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiol. 150(2):858-878. PMID: 19386812
162. Hung, H.C., Kay, S.A., Weber, F. (2009) HSP90, a Capacitor of Behavioral Variation. J. Biol Rhythms 24(3):183-192. PMID: 19465695
161. Pruneda-Paz, J.L., Breton, G., Para, A., Kay, S.A. (2009) A functional genomics approach reveals CHE as a novel component of the Arabidopsis circadian clock. Science 323:1481-1485. PMID: 19286557
160. Hazen S.P., Naef F., Quisel T., Gendron J.M., Chen H., Ecker J.R., Borevitz J.O., Kay S.A. (2009) Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol. Feb 11;10(2):R17. PMID: 19210792
159. Chu J., Hong N.A., Masuda C.A., Jenkins B.V., Nelms K.A., Goodnow C.C., Glynne R.J., Wu H., Masliah E., Joazeiro C.A., Kay S.A. (2009) A mouse forward genetics screen identifies LISTERIN as an E3 ubiquitin ligase involved in neurodegeneration.Proc Natl Acad Sci USA. 106:2097-103. PMID: 19196968
158. Hirota, T., Lewis, W.G., Liu, A.C., Lee, J.W., Schultz, P.G., Kay, S.A. (2008) A chemical biology approach reveals period shortening of the mammalian circadian clock by specific inhibition of GSK-3β. Proc. Natl. Acad. Sci. 105:20746-51 PMID: 19104043
157. Hamilton, E.E., Kay, S.A. (2008) SnapShot: circadian clock proteins. Cell 135:368. PMID: 18957209
156. Michael, T.P., Breton, G., Hazen, S.P., Priest, H., Mockler, T.C., Kay, S.A., Chory, J. (2008) A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLOS Biol. 6:e225 PMID: 189798691
155. Covington, M.F., Maloof, J.N., Straume, M., Kay, S.A., Harmer, S.L. (2008) Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol. 9:R130 PMID: 18710561
154. Sawa, M., Kay, S.A., Imaizumi, T. (2008) Photoperiodic flowering occurs unde internal and external coincidence. Plant Signal Behav. 3:269-271. PMID: 19704651
153. Liu, A.C., Tran, H.G., Zhang, E.E., Priest, A.A., Welsh, D.K., Kay, S.A. (2008) Redundant function of REV-ERBα and β and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms. PLoS Genet 4:E1000023 PMID: 18454201
152. Baudry A. and Kay, S.A. (2008). Clock Control Over Plant Gene Expression. Adv. Bot. Res. 48:69-105
151. Michael, T.P., Mockler, T.C., Breton, G., McEntee, C., Byer, A., Trout, J.D., Hazen, S.P., Shen, R., Priest, H.D., Sullivan, C.M., Givan, S.A., M. Yanovsky, Hong, F., Kay, S.A., Chory, J. (2008) Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genetics 4: E14 PMID: 18248097
150. Para, A., Farré, E., Imaizumi, T., Pruneda-Paz, J.L., Harmon, F.G., Kay, S.A. (2007) PRR3 Is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock. Plant Cell 11:3462-73. ONUDL 1805560
149. Yan L., Karatsoreos I., Lesauter J., Welsh D.K., Kay S., Foley D., Silver R. (2007) Exploring spatiotemporal organization of SCN circuits. Cold Spring Harb Symp Quant Biol. 72:527-41.
148. Imaizumi, T., Kay, S.A., Schroeder, J.I. (2007) Circadian rhythms: Daily watch on metabolism. Science 318:1730-1. PMID: 18006706
147. Sawa, M., Nusinow, D.A., Kay, S.A., Imaizumi, T. (2007) FKF1 and GIGANTEA complex is required for day-length measurement in Arabidopsis. Science 318:261-5. PMID: 17872410
146. Farré, E.M., Kay, S.A. (2007) PPR7 protein is regulated by diurnal and circadian mechanisms in Arabidopsis. Plant J. 52:548-60. ONUDL 17877705
145. Hung, H.C., Maurer, C., Kay, S.A., Weber, F. (2007) Circadian transcription depends on limiting amounts of the transcription co-activator nejire/CBP. J. Biol. Chem.282(43):31349-57.
144. Liu, A.C., Lewis, W.G., Kay, S.A. (2007) Mammalian circadian signaling networks and therapeutic targets. Nat Chem Biol. 3:630-639. PMID: 17876320
143. Breton, G., Kay, S.A. (2007) Plant biology: Time for growth. Nature 448:265-266. PMID: 1767650
142. Borevitz, J.O., Hazen, S.P., Michael, T.P., Morris, G.P., Baxter, I.R., Hu, T.T., Chen, H., Werner, J.D., Norborg, M., Salt, D.E., Kay, S.A., Chory, J., Weigel, D., Jones, J.D., Ecker, J.R. (2007) Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc. Natl. Acad. Sci., USA 104:12057-12062. PMID: 17626786
141. Imaizumi, T., Schroeder, J.I., Kay, S.A. (2007) In SYNC: The ins and outs of circadian oscillations in calcium. Sci STKE 390:32. PMID:17565121
140. Mockler,T.C., Michael, T.P., Priest, H.D., Shen, R, Sullivan, C.M., Givan, S.A., McEntee, C., Kay, S.A., Chory, J. (2007) The Diurnal Project: Diurnal and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb Symp Quant Biol. 72:353-363. PMID: 18419293
139. Fernandez, M.P., Chu, J., Villella, A., Atkinson, N., Kay, S.A., Ceriani, M.F. (2007) Impaired clock output by altered connectivity in the circadian network. Proc. Natl. Acad.Sci, 104:5650-5. PMID: 176369364
138. Liu, A., Welsh, D.K., Ko, C., Tran, H., Zhang, E., Priest, A., Burr, E., Singer, O., Meeker, K., Verma, I., Doyle, F., Takahashi, J., and Kay, S.A. (2007) Intercellular coupling confers robustness against mutations in the SCN circadian clock network. Cell 129:605-16.
137. Zeilinger, M.N., Farre, E.M., Taylor, S.R., Kay, S.A., Doyle III, F.J. (2006) A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Molecular Systems Biology 2:58-71.
136. Faigón-Soverna, A., Harmon, F.G., Storani, L., Karayekov, E., Staneloni, R.J., Gassmann, W., Más, P., Casal, J.J., Kay, S.A., Yanovsky, M.J. (2006) A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development. The Plant Cell 18:2919-2928. PMID: 17114357
135. Allen, T., Koustenis, A., Theodorou, G., Somers, D.E., Kay, S.A., Whitelam, G.C., Devlin, P.F. (2006) Arabidopsis FHY2 specifically gates phytochrome signaling to the circadian clock. The Plant Cell 18:2506-2516.
134. Imaizumi, T., Kay, S.A. (2006) Photoperiodic control of flowering: Not only by coincidence. Trends in Plant Sci. 11:550-558.
133. Breton, G., Kay, S.A. (2006) Circadian rhythms lit up in Chlamydomonas. Genome Biol. 7:215.
132. Weber, F., Hung, H-C., Maurer, C., Kay, S.A. (2006) Second messenger and Ras/MAPK signaling pathways regulate CLOCK/CYCLE-dependent transcription. J. Neurochem 98:248-257.
131. Sato, T.K., Yamada, R.G., Ukai, H., Baggs, J.F. Miragila, L.J., Kobayashi, T.J., Welsh, D.K., Kay, S.A., Ueda, H.R., Hogenesch, J.B. (2006) Feedback repression is required for mammalian circadian clock function. Nature Genetics 38:312-319.
130. Hazen, S.P., Schultz, T.F., Pruneda-Paz, J.L., Borevitz, J.O., Ecker, J.R., Kay, S.A. (2005) LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc. Natl. Acad. Sci., USA 102:10387-10392.
129. Harmer, S., Kay, S.A. (2005) Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell. 17:1926-1940.
128. Hazen, S.P., Borevitz, J.O., Harmon, F.G., Pruneda-Paz, J.L., Schultz, T.F., Yanovsky, M.J., Liljegren, S.J., Ecker, J.R., Kay, S.A. (2005) Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol. 138:990-997.
127. Imaizumi, T., Schultz, T.S., Harmon, F.G., Ho, L.A., Kay, S.A. (2005) FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309:293-297. PMID: 16002617
126. Welsh, D.K., Imaizumi, T., Kay, S.A. (2005) Real-time reporting of circadian-regulated gene expression by luciferase imaging in plants and Mammalian cells. Methods in Enzymol 393:269-288.
125. Farré, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., Kay, S.A. (2005) Overlapping and distinct roles of PPR7 and PPR9 in the Arabidopsis Circadian Clock. Curr Bio. 15:47-54.
124. Welsh, D.K., Kay, S.A. (2005) Bioluminescence imaging in living organisms. Curr. Opin. Biotech. 16:73-78.
123. Flechner, S.M., Kurian, S.M., Head, S.R., Sharp, S.M., Whisenanf, T.C., Zhang, J., Chismar, J.D., Horvath, S., Mondala, T., Gilmartin, T., Cook, D.J., Kay, S.A., Walker, J.R., Salomon, D.R. (2004) Kidney transplant rejection and tissue injury by gene profiling of biopsies and perifpheral blood lymphocytes. Am. J. Transplant 4:1475-1489.
122. Welsh, D.K., Yoo, S.H., Liu, A.C., Takahashi, J.A., Kay, S.A. (2004) Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Curr. Biol. 14:2289-2295.
121. Sato, T.K., Panda, S., Miraglia, L.J., Reyes, T.M., Rudic, R.D., McNamara, P., Naik, K.A., FitzGerald, G.A., Kay,.SA., Hogenesch, J.B. (2004) A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron 43:527-537.
120. Ueda, H.R., Hayashi, S., Matsuyama, S., Yomo, T., Hashimoto, S., Kay, S.A., Hogenesch, J.B., Iino, M. (2004) Universality and flexibility in gene expression from bacteria to human. Proc. Natl. Acad. Sci. U.S.A., 101:3765-3769.
119. Panda, S., Hogenesch, J.B., Kay, S.A. (2003) Circadian light input in plants, flies and mammals. Novartis Foundation Symposium 253:73-82.
118. Hogenesch, J.B., Panda, S., Kay, S.A., Takahashi, J.S. (2003) Circadian transcriptional output in the SCN and liver of the mouse. Novartis Foundation Symposium 253:171-180.
117. Mas, P., Kim, W-Y., Somers, D., Kay, S.A. (2003) Targeted degradation of TOC1 by ZTL modulates circadia function in Arabidopsis. Nature 426:567-570. PMID:14654842
116. Devlin, P.F., Yanovsky, M.J., Kay, S.A. (2003) A genomic analysis of the shade avoidance response in Arabidopsis thaliana. Plant Physiol. 133:1617-1629.
115. Harmon, F.G. and Kay, S.A., (2003) The F-box protein AFR is a positive regulator of phytochrome A-mediated ligh signaling. Curr. Biol. 13:2091-2096.
114. Weber, F., Kay, S.A. (2003) A PERIOD inhibitor buffer introduces a delay mechanism for CLK/CYC-activated transcription. FEBS Letters 555:341-345.
113. Imaizumi, T., Tran, H.G., Swartz, T.E., Briggs, W.R., Kay, S.A. (2003) FKF1 is critical for photoperiodic-specific light signaling in Arabidopsis. Nature 426:302-306. PMID:14628054
112. Hazen, S.P., Kay, S.A. (2003) Gene arrays are not just for measuring gene expression. Trends in Plant Science 8:413-416.
111. Panda, S., Provencio, I., Tu, D.C., Pires, S.S., Rollag, M.D., Castrucci, A.M., Pletcher, M., Sato, T.K., Wiltshire, T., Andahazy, M., Kay, S.A., Van Gelder, R.N., Hogenesch, J.B. (2003) Melanopsin is required for non-image forming photic responses in blind mice. Science 301:525-527.
110. Schultz, T.F., Kay, S.A. (2003) Circadian clocks in daily and seasonal control of development. Science 301:326- 328.
109. Sato, T.K., Kay, S.A., Hogenesch, J.B. (2003) DNA arrays: Applications and implications for circadian biology. J. Biol. Rhythms 18:96-105.
108. Yanovsky, M.J., Kay, S.A. (2003) Living by the calendar: How plants know when to flower. Nature Rev. Mol. Cell. Bio. 4:265-275.
107. Wiltshire, T., Pletcher, M.T., Batalov, S., Barnes, S.W., Tarantino, L.M., Cooke, M.P., Wu, H., Smylie K., Santrosyan, A., Copeland, N.G., Jenkins, N.A., Kalush, F., Mural, R.J., Glynne, R.J., Kay, S.A., Adams, M.D., Fletcher, C.F. (2003) Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc. Natl. Acad.Sci. USA 100:3380-3385.
106. Panda, S., Sato, T.K., Castrucci, A.M., Rollag, M.D., DeGrip, W.J., Hogenesch, J.B., Provencio, I., Kay, S.A. (2003) Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science 298:2213-2216.
105. Mas, P., Alabadi, D., Yanovsky, M.J., Oyama, T., Kay, S.A. (2003) Dual role of TOC1 in the control of circadian and photo-morphogenic responses in Arabidopsis. The Plant Cell 15:223-236.
104. Ceriani, M.F., Hogenesch, J.B., Yanovsky, M., Panda, S., Straume, M., Kay, S.A. (2002) Genome-wide expression analysis in Drosophila predicts genes controlling circadian behavior. J. Neuroscience 22:9305-9319.
103. Yanovsky, M.J. and Kay, S.A. (2002) Molecular basis of seasonal time measurement in Arabidopsis. Nature 419:308-312. PMID: 12239570
102. Panda, S., Hogenesch, J.B., Kay, S.A. (2002) Circadian rhythms from flies to human. Nature 417:329-335.
101. Beachy, R., Bennetzen, J.L., Chassy, B.M., Chrispeels, M., Chory, J., Ecker, J.R., Noel, J.P., Kay, S.A., Dean, C., Lamb, C., Jones, J., Santerre, C.R., Schroeder, J.I., Umen, J., Yanofsky, M., Wessler, S., Zhao, Y., Parrott, W. (2002) divergent perspectives on GM food. Nat Biotechnol 20:1195-6.
100. Scully, A.L., Zehhof, A.C., Kay, S.A. (2002) A P element with a novel fusion of reporters identifies regular, a C2H2 zinc-finger gene downstream of the circadian clock. Mol. Cell. Neurosci 19:501-514.
99. Panda, S., Antoch, M.P., Miller, B.H., Su, A.I., Schook, A.B., Straume, M., Schultz, P.G. Kay, S.A., Takahashi, J.S., Hogenesch, J.B. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109:307-320.
98. Alabadi, D., Yanovsky, M.J., Mas, P., Harmer, S.L., Kay, S.A. (2002) Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr. Biol. 12:757-761.
97. Schultz, T.F., Kiyosue, T., Yanovsky, M., Wada, M., Kay, S.A. (2001) A role for LKP2 in the circadian clock of Arabidopsis. The Plant Cell 13:2659-2670.
96. Harmer, S.L., Panda, S., Kay, S.A (2001) Molecular bases of circadian rhythms. Annual Rev. Cell Dev. Bio. 17:215-53.
95. Yanovsky, M.J. and Kay, S.A. (2001) Signaling networks in the plant circadian system. Curr. Opin. Plant Bio. 4:429-435.
94. Hogenesch, J.B., Ching, K.A., Batalov, S., Su, A.I., Walker, J.R., Zhou, Y., Kay, S.A., Schultz, P.G., Cooke, M.P. (2001) A comparison of the Celera and Ensembl predicted gene sets reveals little overlap in novel genes. Cell 106:413-415.
93. Young, M.W., Kay, S.A. (2001) Time zones: A comparative genetics of circadian ckocks Nat Rev Genet. 2:702-715.
92. Alabadi, D., Oyama, T., Yanovsky, M., Harmon, F.G., Mas, P., Kay, S.A. (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293:880-883. PMID: 11486091
91. Covington, M.F., Panda, S., Liu, X.L., Strayer, C.A., Kay, S.A., Wagner, D.R. (2001) ELF3 modulates resetting of the circadian clock in Arabidopsis. The Plant Cell 13:1305- 1316.
90. Ledger, S., Strayer, C., Ashton, F., Kay, S.A., Putterill, J. (2001) Analysis of the function of two circadian-regulated CONSTANS-LIKE genes. Plant J. 26:15-22.
89. Wang, G.K., Ousley, A., Darlington, T.K., Chen, D., Chen, Y., Fu, W., Hickman, L.J., Kay, S.A., Sehgal, A. (2001) Regulation of the cycling of timeless (tim) RNA. J. Neurobiol. 47:161-175.
88. Nadeau et al. (2000) Sequence Interpretation: Functional Annotation of Mouse Genome Sequences. Science 91:1251-1255.
87. Devlin, P.F., Kay, S.A. (2000). Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. The Plant Cell 12:2499-2510.
86. Harmer, S.L., Hogenesch, J.B., Straume, M., Chang, H-S., Zhu, T., Wang, X., Kreps, J.A., Kay, S.A. (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-2113. PMID:011118138
85. Lyons, L.C., Darlington, T.K., Hao, H., Houl, J., Kay, S.A. (2000) Specific sequences outside the E-box are required for proper per expression and behavioral rescue. J. Biol. Rhythms 15:472-482.
84. Darlington, T.K., Lyons, L.C., Hardin, P.E., Kay, S.A. (2000) The period E-box is sufficient to drive circadian oscillation of transcription in vivo. J. Biol. Rhythms 15:462-71.
83. Mas, P., Devlin, P.F., Panda, S., Kay, S.A. (2000) Functional interaction of phytochrome B and cryptochrome 2. Nature 408:207-211.
82. Wager-Smith K., Kay, S.A. (2000) Circadian rhythm genetics: from flies to mice to humans. Nature Genetics 26:23-27.
81. Kreps, J.A., Muramatsu, T., Furuya, M., Kay, S.A. (2000) Fluorescent differential display identifies circadian clock-regulated genes in Arabidopsis thaliana. J. Biol. Rhythms 15:208-217.
80. Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Mas, P., Panda S., Kreps, J.A., Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289:768-771.
79. Devlin, P., Kay, S.A. (2000) Flower arranging in Arabidopsis. Science 288:1600-02.
78. Somers, D.E., Schultz, T.F., Milnamow, M., Kay, S.A. (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101:319-329 (Cover)
77. Harmer, S.L., Kay, S.A. (2000) Microarrays: Determining the balance of cellular transcription. The Plant Cell 12:612-616.
76. Scully, A., Kay, S.A. (2000) Time flies for Drosophila. Cell 100:297-300.
75. Park, D.H., Somers, D.E., Kim, Y.S., Choy, Y.H., Lim, H.K., Soh, M.S., Kim, H.J., Kay, S.A., Nam, H.G. (1999) Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285:1579-1582.
74. Strayer, C.A., Kay, S.A. (1999) The ins and outs of circadian regulated gene expression. Curr. Opin. Plant Biol. 2:114-120.
73. Devlin, P.F., Kay S.A. (1999) Cryptochromes-bringing the blues to circadian rhythms. Trends Cell Biol. 9:295-298.
72. Ceriani M.F., Darlington T.K., Staknis D., Mas P., Petti A.A., Weitz C.J., Kay S.A. (1999) Light-dependent sequestration of TIMELESS by CRYPTOCHROME. Science 285:553-556.
71. Yamaguchi, R., Nakamura, M., Mochizuki, N., Kay, S.A., Nagatani A. (1999) Light- dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis. J. Cell. Bio. 145:437-445.
70. Somers, D., Devlin, P., Kay, S.A. (1998) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science 282:1488-1490.
69. Stanewsky, R., Kaneko, M., Emery, P., Beretta, B., Wager-Smith, K., Kay, S.A., Rosbash, M., Hall J.C. (1998) The cryb mutation identifies cryptochrome as a circadian photoreceptor in Drosophila. Cell 95:681-692.
68. Andersson, C.R., Kay, S.A. (1998) COP1 and HY5 interact to mediate light-induced gene expression. Bioessays 20:445-448.
67. Genoud, T., Millar ,A.J., Nishizawa, N., Kay, S.A., Schafer, E., Nagatani, A. Chua, N-H. (1998) An Arabidopsis mutant hypersensitive to red and far-red light signals. The Plant Cell 10:889-904.
66. Kolar, C., Fejes, É., Ádám, E., Schäfer, S., Kay, S.A., Nagy, F. (1998). Transcription of Arabidopsis and wheat CAB genes in single tobacco transgenic seedlings exhibits independent rhythms in a developmentally regulated fashion. Plant J. 13:563-570.
65. Darlington, T., Wager-Smith, K., Ceriani, F., Staknis, D., Gekakis, N., Steeves, T., Weitz, C., Takahashi, J., Kay, S.A. (1998) Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim. Science 280:1599-1603. PMID: 9616122
64. Sullivan, K., Kay, S.A. (1998). Editors of Methods in Cell Biology volume 58, “Green Fluorescent Proteins”. 20 chapters, 379 pages.
63. Plautz, J.D., Kay, S.A. (1998) Synchronous real-time reporting of multiple cellular events. In “Green Fluorescent Proteins”, Sullivan K., Kay S.A. eds. Methods in Cell Biology, vol. 58, pp. 283-293.
62. Pellequer, J-L., Wager-Smith, K., Kay, S.A., Getzoff, E. (1998) Photoactive Yellow Protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc. Natl. Acad. Sci. USA 95:5884-5890.
61. Somers, D., Webb, A. Pearson, M., Kay, S.A. (1998) The short period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125:485-494.
60. Welsh, S., Kay, S.A. (1997) Reporter gene expression for monitoring gene transfer. Curr. Opin. Biotechnol. 8:617-622.
59. Plautz, J., Kaneko, M., Hall, J., Kay, S.A. (1997) Independent photoreceptive circadian clocks throughout Drosophila. Science 278:1632-1635. (Cover)
58. Guesz, M., Fletcher, C., Block G., Straume, M., Copeland, N.G., Jenkins, N.A., Kay, S.A., Day, R. (1997) Long-term monitoring of circadian rhythms in c-fos gene expression from suprachiasmatic nucleus cultures. Curr. Biol. 7:758-766.
57. Anderson, S., Somers, D., Millar, A.J., Hanson, K., Chory, J., Kay, S.A. (1997) Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. The Plant Cell 9:1727-1743. (Cover)
56. Stanewsky, R, Jamison, C., Plautz, J., Kay, S.A., Hall J.C. (1997) Two circadian- regulated elements contribute to cycling period gene expression in Drosophila. EMBO J. 16:5006-5018.
55. Periasamy, A., Kay, S.A., Day, R. (1997) Fluorescence Resonance Energy Transfer (FRET) imaging of a single living cell using Green Fluorescent Protein. SPIE Proceedings 2983:58-66.
54. Kreps, J., Kay, S.A. (1997) Coordination of metabolism and development by the circadian clock. The Plant Cell 9:1235-1244.
53. Kay, S.A. (1997) As time PASses: the first mammalian clock gene. Science 276:1093.
52. Kay, S.A. (1997) PAS, present and future: clues to the origins of circadian clocks. Science 274:753-754.
51. Millar, A.J., Kay, S.A. (1997) The genetics of phototransduction and circadian rhythms in Arabidopsis. Bioessays 19:209-214.
50. Bischoff, F., Millar, A.J., Kay, S.A., Furuya, M. (1997) Phytochrome-induced intercellular signaling activates cab::luciferase gene expression. Plant J. 12:839-850.
49. Plautz, J., Straume, M., Stanewsky, R., Jamison, C., Brandes, C., Dowse, H., Hall, J.C., Kay, S.A. (1997) Quantitative analysis of Drosophila period gene transcription in living animals. J. Biol. Rhythms 12:204-217.
48. Millar, A.J., Kay, S.A. (1996) Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc. Natl. Acad. Sci., USA. 93:15491-15496.
47. Hicks, K., Millar, A.J., Carre, I., Somers, D., Straume, M., Meeks-Wagner, R., Kay, S.A. (1996) Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science 274:790-792.
46. Carre, I. and Kay, S.A. (1996) Mechanisms of input and output in circadian transduction pathways. In Signal Transduction in Plant Growth and Development. D.P. Verma, Ed. pp 231-248.
45. Anderson, S., Kay, S.A. (1996) Phototransduction and circadian clock pathways regulating gene transcription in higher plants. Advances in Genetics 35:1-34.
44. Anderson, S., Kay, S.A. (1996) Illuminating the mechanism of the circadian clock in plants. Trends in Plant Sci. 1:51-57. (Cover)
43. Brandes, C., Plautz, J.D., Stanewsky, R., Jamison, C., Straume, M., Wood, K., Hall, J.C., Kay, S.A. (1996) Novel features of Drosophila per gene expression revealed by real-time luciferase reporting. Neuron 16:687-692.
42. Plautz, J.D., Day, R.N., Dailey, G.M., Welsh, S.B., Hall, J.C., Halpain, S., Kay, S.A. (1996) Green fluorescent protein and its derivatives as versatile markers for gene expression in living Drosophila, plant and mammalian cells. Gene 173:83-87.
41. Kay, S.A. and Millar, A.J. (1995) New models in vogue for circadian clocks. Cell 83:361-369.
40. Carre, I., Kay, S.A. (1995) Multiple DNA-protein interactions at a circadian-regulated promoter element. The Plant Cell 7:3039-2051.
39. Teakle, G. and Kay, S.A. (1995) The GATA-binding protein CGF-1 is closely related to GT-1. Plant Mol. Biol. 29:1253-1266.
38. Millar, A.J., Straume, M., Chory, J., Chua, N-H., Kay, S.A. (1995) Regulation of circadian period by phototransduction pathways in Arabidopsis. Science 267:1163-1166. (Cover)
37. Millar, A.J., Carre, I., Strayer, C., Chua, N-H., Kay, S.A. (1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267:1161-1163. (Cover) PMID: 9080770
36. Anderson, S., Kay, S.A. (1995) Functional dissection of circadian- and phytochrome-regulated cis-acting DNA elements in the Arabidopsis CAB2 gene. Proc. Natl. Acad. Sci., USA. 92:1500-1504.
35. Anderson, S., Teakle, G., Martino-Catt, S., Kay, S.A. (1994) Circadian clock- and phytochrome-regulated transcription is conferred by a 78 bp cis-acting domain of the Arabidopsis cab2 promoter. Plant J. 6:457-470. (Cover)
34. McClung, C.R., Kay, S.A. (1994) Circadian rhythms in the higher plant, Arabidopsis thaliana. In: Arabidopsis thaliana. C. Somerville and E. Meyerowitz, eds. Cold Spring Harbor pp. 615-637.
33. Martino-Catt, S., Kay, S.A. (1994) Optimization of DNAse I footprinting. Plant Mol. Bio. Man. 2nd Edition. Section I2, pp 1-13.
32. Kern, R., Gasch, A., Deak, M., Kay, S.A., Chua, N-H. (1993) Phytochrome B of tobacco, a new member of the phytochrome family. Plant Physiol. 102:1363-1364.
31. Nagatani, A., Nishizawa, N., Mori, S., Kay, S.A., Chua, N-H., Furuya, M. (1993) Light regulation of hypocotyl elongation and greening in transgenic tobacco seedlings that overexpress rice phytochrome A. Plant Cell Physiol. 34:825-833.
30. Kay, S.A. (1993) Shedding light on clock-controlled cab gene transcription in higher plants. Sem. Cell. Biol. 4:81-86.
29. Adam, E., Deak, M., Kay, S.A., Chua, N-H., Nagy, F. (1993). Sequence of a tobacco gene encoding type A phytochrome. Plant Phys. 101:1407-1408.
28. Stockhaus, J., Nagatani, A., Halfter, U., Kay, S.A., Furuya, M., Chua, N-H. (1992) Serine to alanine substitutions at the amino terminal region of phytochrome A result in an increase in biological activity. Genes Dev. 6:2364-2372.
27. Millar, A.J., Short, S., Hiratsuka, K., Chua, N-H., Kay, S.A. (1992) Firefly luciferase as a reporter of regulated gene expression in plants. Plant Mol. Bio. Rep. 10:324-337.
26. Kay, S.A., Millar, A.J. (1992) Circadian-regulated gene transcription in Arabidopsis thaliana. Discussions in Neuroscience 3:103-105.
25. Millar, A.J., Short, R., Chua, N-H., Kay, S.A. (1992) A novel circadian phenotype based on firefly luciferase expression in transgenic plants. The Plant Cell 4:1075-1087.
24. Gilmartin, P., Memelink, J., Hiratsuka, K., Kay, S.A., Chua, N-H. (1992) Characterization of a gene encoding a DNA binding protein with specificity for a light-responsive element. The Plant Cell 4:839-849.
23. Foster, R., Gasch, A., Kay, S.A., Chua, N-H. (1992) Analysis of in vitro DNA-Protein Interactions. Methods in Arabidopsis Research. C. Koncz ed., pp. 378-392. World Scientific.
22. Kay, S.A., Millar, A. (1992) Circadian Regulated Cab Gene Expression in Higher Plants, pp. 73-90. Young M., ed. Marcel Dekker.
21. Millar, A.J., Kay, S.A. (1991) Circadian control of cab gene transcription and mRNA accumulation in Arabidopsis. The Plant Cell 3:541-550.
20. Nagatani, A., Kay, S.A., Chua, N-H., Furuya, M. (1991) Phytochrome regulation of hypocotyl elongation in transgenic tobacco seedlings. Proc. Natl. Acad Sci., USA 88:5207-5211.
19. Kay, S.A. (1990) GT-1 and GC-1 interact with conserved sequences in the rice phytochrome promoter. In Phytochrome: properties and action, Thomas B. ed. NATO- ASI, Plenum Press, NY.
18. Fejes, E., Pay, A., Kanevsky, I., Szell, M., Adam, E., Kay, S.A., Nagy, F. (1990) A 268 bp upstream sequence mediates the circadian clock-regulated transcription of the wheat Cab-1 gene in transgenic plants. Plant Mol. Bio. 15:921-932.
17. Williams, M., Mundy, J., Kay, S.A., Chua, N-H. (1990) Differential expression of two related organ specific genes from pea. Plant Mol. Biol. 14:765-774.
16. Darrah, P., Kay, S.A., Teakle, G., Griffiths, W.T. (1989) Cloning and sequencing of protochlorophyllide reductase. Biochem. J. 265:178-197.
15. Kay, S.A., Nagatani, A., Keith B., Deak, M., Furuya, M., Chua, N-H. (1989) Rice phytochrome is biologically active in transgenic tobacco. The Plant Cell 1:775-782.
14. Kay, S.A., Keith, B., Shinozaki K., Chua, N-H. (1989) The sequence of the rice phytochrome gene. Nucl. Acids Res. 17:2865-2866.
13. Kay, S.A., Keith, B., Shinozaki, K., Chye, M-L., Chua, N-H. (1989) The rice phytochrome gene: structure, autoregulated expression and binding of GT-1 to conserved sites in the 5' upstream region. The Plant Cell 1:351-360.
12. Green, P.J., Kay, S.A., Lam, E., Chua, N-H. (1989) In vitro DNA footprinting. Plant Molecular Biology Manual, 1st supplement. Gelvin S.B. & Schilperoort R.A. eds. Kluwer Academic Publishers.
11. Nagy, F., Kay, S.A., Chua, N-H.(1988) Gene regulation by phytochrome. TIGS 4:37- 42.
10. Cuozzo, M., Kay, S.A., Chua, N-H. (1988) Regulatory circuits of light responsive genes. Plant Gene Research, Vol. 5. Temporal and Spatial Regulation of Plant Genes. Verma D.P.S. & R.B. Goldberg eds. Springer-Verlag.
9. Nagy, F., Kay, S.A., Chua, N-H. (1988) The analysis of gene expression in transgenic plants. Plant Molecular Biology Manual. Gelvin S.B. & Schilperoort R.A. eds. Kluwer Academic Publishers.
8. Nagy, F., Kay S.A., Chua, N.-H. (1988) A circadian clock regulates transcription of the wheat Cab-1 gene. Genes Dev. 2:376-382.
7. Green, P.J., Kay, S.A., Chua, N-H.(1987) Sequence specific binding of a pea nuclear factor to the 5' upstream region of the rbcS-3A gene. EMBO J. 6:2543-2549.
6. Fluhr, R., Kuhlemeier, C., Green, P.J., Kay, S.A., Strittmatter, G., Cuozzo, M., Nagy, F., Chua, N-H. (1987) Multiple positive and negative sequence elements mediate the light induced expression of a plant gene. In Plant Molecular Biology, Von Wettstein, D. and Chua, N-H. eds. Plenum Press, New York, in cooperation with NATO Scientific Affairs Division. 140:583-588.
5. Nagy, F., Fluhr, R., Kuhlemeier, C., Kay, S.A., Boutry, M., Green, P.J., Poulsen, C,. Chua, N-H. (1986) Cis-acting elements for selective expression of two photosynthetic genes in transgenic plants. Phil. Trans. R. Soc. Lond. B314:493‑500.
4. Nagy, F., Kay, S.A., Boutry, M., Hsu, M‑Y., Chua, N‑H. (1986) Phytochrome controlled expression of a wheat Cab gene in transgenic tobacco seedlings. EMBO J. 5:1119-1124.
3. Griffiths, W.T., Oliver, R.P., Kay, S.A. (1985) A critical appraisal of the role and regulation of NADPH-Protochlorophyllide oxidoreductase in greening plants. In Protochlorophyllide Reduction and Greening. Sironval C. and Brouers M. eds. The Hague, The Netherlands, pp 19-28.
2. Griffiths, W.T., Kay, S.A., Oliver, R.P. (1985) The presence and photoregulation of protochlorophyllide reductase in green tissues. Plant Mol. Bio. 4:13-22.
1. Kay, S.A., Griffiths, W.T. (1983) Light induced breakdown of NADPH-Protochlorophyllide reductase in vitro. Plant Physiol. 72:229-237.
