-- PROGRESSIVE (similarity) ALIGNMENT -- Blosum62 Sequences are entered in the following order: 1)YBEC YBECBSU.TXT 2)YVEA YVEABSU.TXT 3)Y609 Y609MJA.TXT 4)YBAT YBATECO.TXT 5)CAT2 CAT2AFU.TXT 6)ORFT ORF1MTH 7)YW19 YW19MTU 8)CTAF CAT1AFU.TXT ---- Alignment ---- *** (gap penalty = 6) *** YBEC M_N Q L H R R M G T F S L M M V G L G S M I G_S YVEA M_S K Q G N F Q K S M S L F D L I L I G M G A I F G_S Y609 M_E L K N K K L S L W E A V S M A V G V M I G_A YBAT M M_N T E G N N G N K P L G L W N V V S I G I G A M V G_A CAT2 M_ R E K I G F W E A V S I G I G G M I G_G ORFT M_K P N L R R E L G L F D A V N L V V G T I V G_A CTAF M_Q V Q V S L S R D L S F F D I T M I G I A G M I G_A YW19 M_R R P L D P R D I P D E L R R R L G L L D A V V I G L G S M I G_A YBEC G W L F G A W R A A Q I A G P A A I I S W V I G M V V I L F I A L S YVEA A W L F A V S N V A S K A G P S G A F S W I L G G A I I L L I G L V Y609 S I F S I F G V G A K I A G R N L P E T F I L S G I Y A L L V A Y S YBAT G I F A L L G Q A A L L M E A S T W V A F A F G G I V A M F S G Y A CAT2 G I F A V L G L S V Q L A K G S A P I A F L I A G I V A L F T A Y S ORFT D I Y I V A A Y G A G S L G P A S I L A W L L A G L M A L I I A L V CTAF G V F A L T G I A A G I A G P A I I L A F F L N G I I A T L T G L A YW19 G I F A A L A P A A Y A A G S G L L L G L A V A A V V A Y C N A I S YBEC Y S E L G S M F P E A G G_M V K Y T Q Y S H G_ S F I G F I A G W A N YVEA Y A E L G A A L P R T G G_I I R Y P V Y S H G_ H L V G Y L I S F V T Y609 Y T K L G A K I V S N A G_P I A F I H K A I G_D N I I T G A L S I L L YBAT Y A R L G A S Y P S N G G_I I D F F R R G L G_N G V F S L A L S L L Y CAT2 Y A K L S L R F P S E G G_T I E F L I K A Y G_T G L L A G G L N I L L ORFT F S E A S A M L P R T G G_P Y V Y A G E A L G_ R F T G F I T G W S L CTAF Y A E L G S A M P Q A G G_G Y L W I K E A M G_ D Y A G F M A G W I D YW19 S A R L A A R Y P A S G G_T Y V Y G R M R L G_ D F W G Y L A G W G F YBEC W I A I V S V I P V E A V A S V Q Y M S S W P W E W A K W T S G L V YVEA I V A Y T S L I S I E V T A V R Q Y V A Y W F P G L T I K G S D Y609 W M S Y V I S I A L F A K G F A G Y F L P L I YBAT L L T L A V S I A M V A R A F G A Y A V Q F L CAT2 L V S Y V V M I A L Y S Y A F G S Y A A N A L G ORFT W V S S W V A I A V F P L A F I Y Y L E Y F I P L CTAF W A A H T I A C A L Y A V T F G A F F A E M L V G F V YW19 V V G K T A S C A A M A L T V G F Y V YBEC K N G T L T G E G L A F A S V L L L I Y F L L N_Y W T V N L F S K A YVEA S P T I S G W I L Q F A L L C L F F L L N_Y W S V K T F A K A Y609 N A P I N T F N I A I T E I G I V A F F T A L N_F F G S K A V G R A YBAT H E G S Q E E H L I L L Y A L G I I A V M T L F N_S L S N H A V G R L CAT2 T P I L K S F L I A F V V I F F T V L N_S L G A V V S G R A ORFT D P P A E A V I K V L F I L S L T I I N_I A G V G R A G K V CTAF G L P L P H V L T A K I S S L A M V S F L A Y V N_Y R G A K E S G F L YW19 W P A Q A H A V A V A V V V A L T A V N_Y A G I Q K S A W L YBEC N S L I T I F K I I I P G L T I G A L L F V G F H G E N F T G G Q S YVEA N F I I S I F K Y I V P I T I I I V L I F H F Q P E N L S V Q G Y609 E F F I V L V K L L I L G L F I F A G L I T I H P S Y V I P D YBAT E V I L V G I K M M I L L L L I I A G V W S L Q P A H I S V CAT2 E D L L V A F K L A V L V I V A A A G L A F V N P E R L ORFT N D I L T I L K V A P V L L F A V L G A I H L A L N P G L L V S N CTAF G S L V T V L K V L I L L V F A G F G I I K M L S Y P D W Q S S YW19 T R S I V A V V L V V L T A V V V A A Y G S G A A D P A R L YBEC I A P N G W A S V L T A V A T S G I V F_ A F N G_F Q S P I N M A G E YVEA F A P F G F T G I Q A A I S T G G V M F_ A Y L G_L H P I V S V A G E Y609 L A P S A V S G M I F A S A I F F_L S Y M G_F G V I T N A S E H YBAT S A P P S S G A F F S C I G I T F_L A Y A G_F G M M A N A A D K CAT2 M P S N W A D A V S I I A G G M I I F_L A Y E G_F E L I A N A G G D ORFT Y T P A A P M G L G A L G T V T V L V F_W A Y V G_F E L V T V P A D E CTAF F T P F F P T G F A G V L A A M G L T F_I A F E G_F E I I V Q S G E E YW19 D I G V D A H V W G M L Q A A G L L F_F A F A G_Y A R I A T L G E E YBEC A K N P_G K S I P I A V V G S L F V A T V I Y_V L L Q I A F I G A V N YVEA V Q N P_K R N I P I A L I I C I I V S T I I Y_T V L Q V T F I G A I P Y609 I E N P_K K N V P R A I F I S I L I V M F V Y_V G V A I S A I G N L P YBAT V K D P_Q V I M P R A F L V A I G V T T L L Y_I S L A L V L L S D V S CAT2 V E H P_ K V L E K A F Y V S V V V V I A V Y_V L I A I I T V G T L P ORFT V R D P_E R T I P L S I T L G M I F V T L F Y_I L T N A V I L G L V P CTAF V K D P_E K N I P K A I V V S L W V A V A I Y_I L I A F S L L G A V R YW19 V R D P_A R T I P R A I P L A L G I T L A V Y_A L V A V A V I A V L G YBEC P S D I A H G W S H L N F N S P F A D L A I A L N I N W L V YVEA T E T L K H G W P A I G R E F S L P F K D I A V M L G L G W L A Y609 I D E L I K A S E N A L A V A A K P F L G N L G F L L YBAT A L E L E K Y A D T A V A Q A A S P L L G H V G Y V I CAT2 Y E K I M E A R D Y A L A I A A E P A L G Q L G F W F ORFT W R V L A S S T A P L T V A G Y S L M G G I G A L I CTAF A D V P S W M Y L G Q L A E L S L V K V A D S I M P L G G W M YW19 P Q R L A R A A A P L S E A M R V A G V N W L I P V YBEC I V L Y A D A F V S P S G T G I T Y T A T T S R M V Y G M E K N K Y M YVEA T L V I L D A I L S P G G N G N I F M N T T S R L V Y A W A R N G T L Y609 I S I G A L F S I S S A M N A T I Y G G A N V A Y S L A K D G E L YBAT V V I G A L L A T A S A I N A N L F A V F N I M D N M G S E R E L CAT2 V T F A A L A S T S S A I N A T L Y G T A R A S Y M V A K F G E L ORFT L T A G A V F S I A G S E E A G M L T T A R L L F A M S E D G F L CTAF I L A G G L I S T I S A M N A T I Y S S S R V I F A L S R S G Y L YW19 V Q I G A A V A A L G S L L A L I L G V S R T T L A M A R D R H L YBEC P S I F G K L H P I Y G V P R Q A M F F N L I V S F I F L F L F R YVEA F G I F S K V N K D T G T P R A S L W L S F A L S I F W T L P F P Y609 P E F F E R K V W F K S T E G L Y I T S A L G V L F A L L F N YBAT P K L M N K S L W R Q S T W G N I I V V V L I M L M T A A L CAT2 P E F V G K K L W R Q A Y E G L V V I P I L S I I L S I T T ORFT P G F L S R V H R R F G T P H M S I L V Q N L T A L L A A L T G CTAF H R S L S A I N E R T K T P H Y A I F F S Y I I I A A A S L A YW19 P R W L A A V H P R F K V P F R A E L V V G A V V A A L A A T A YBEC G W G V L A E I I S V A T L I S Y I T G P I T V M T L_R R T G K D L Y YVEA S W N A L V N V C S V A L I L S Y A I A P I S S A A L_R V N A K D L N Y609 M E G V A S I T S A V F M V I Y L F V I L S H Y I L_ I D YBAT N L G S L A S V A S A T F L I C Y L A V F V V A I R L_R H D CAT2 N L E T I A T A G S G G F L L I F A A V N L A A V K L_R R K V K V ORFT T V S G L I E L S V V T L L L P Y A V T C I S L A I L_R R R D CTAF P I E A V A S A A S L M F I I L F L A V N V T L I I L_R L R R P D I Q YW19 D I R G A I G F S S F G V L V Y Y A I A N A S A L T L_G L D E G YBEC R P L R L K G L N V I A P L G F I F A S L V L Y W A R W P L T YVEA R P F Y L K G M S I I G P L S F I F T A F I V Y W S G W K T V S W L L Y609 E V G G R K E I V I F S F I V YBAT I H A S L P I L I V CAT2 N P L I S S A G A I M A L A A F T I L A L R M A E E N L Y A L A V M L ORFT G S G I P L K S V L CTAF S A F R L P L V P V L P A I A A A L L A V V S Y F L I T Q V E H YW19 R P R R L I P L V G L I G C V V L A F A L P L S S V A A G A A V L YBEC G Q V L F I I L I G L P I Y F Y Y Q A K A K W K YVEA G S Q L V M F L I Y L C F S K Y T P K E D V Y609 V L G V F L L L L Y Y Q YBAT G T L V M L L V I V G F I Y S L W S CAT2 S L I A A S F L F E W T Y R W Y T G R E I G R ORFT G V L V C I Y L L M N T T P S T T A CTAF G E G V F L I T I A W M F L G S F F Y F A Y S E K E L E K R E E E E V YW19 G V G V A A Y G V YBEC G F G R N F YVEA S L A Q Q L Y609 YBAT Q G S CAT2 Y V D R K L I E R E K N ORFT CTAF M T V F T E K P V E K M E Y T I L V P V A N P V I A K K L V R F A E L YW19 YBEC K YVEA K Y609 YBAT R CAT2 L R N ORFT CTAF I A R K K K G A V V I L N T V R L P Q Q T P I S A P A K D V K K A K E YW19 YBEC A G V W YVEA S A W W Y609 W YBAT A L I W CAT2 W E E W ORFT W CTAF L V E G L M N L S V P S G G V V K V S H S V S E A I L S T A E E W K A YW19 YBEC YVEA Y609 YBAT CAT2 ORFT CTAF N M I V M G W R G R T F R R D V V L G S T I D P V L L K A K C D V V V YW19 YBEC M V F Y L L A M M YVEA L I G F Y I M M L Y609 I T N R F V F Y G I YBAT I I G S L L L S L I CAT2 I P A V V D E L R R R Y S D S E V Y L V G S L ORFT G L L L I L S CTAF I R F E P G E K I P E F R D V L I S T I G G P H A K L G Y E I A R A L YW19 R R I I T R R YBEC V I S Y L G S D K F G G L N V I YVEA I F S Y I G S F G H G L G I I Y609 I A T F I G V L I F E I I YBAT V A CAT2 A R G E A E K A G D V D L L V L T D A V ORFT G A P L Y L I CTAF V E D K S G R I K L L Y V G S S E K E R E K A E K V F E E A M E I L N YW19 A R Q T D S G D YBEC H Y G W D M V L I A M V S L V F Y V W A L K S G YVEA S N P V D L I L V A I G S L A I Y Y W A Y609 Y R K V T K R T F S N N M Y V YBAT M V M K R N K T V CAT2 E N G E K E G I T R D I K K K L E L G ORFT F G F K R L R R CTAF G L N V E R E F A I S S S P S D V V A R E A E S F D L V I V G A S E R YW19 T Q R S G H P S A T YBEC Y Q T E Y L K D A K E I N S Q L L N G Q S E A A A G K E YVEA K Y T G L P K A A I D Y D K Y609 K S YBAT CAT2 P Q H C L D L H F E K K S L R D E A L K R A V S Y R R L K ORFT CTAF T F L K N F L T G L F P E K V V M K T S K T V A M T R K W V G L L N R YW19 -- Results -- Length of sequences with gaps = 770 Average sequence length: 507 Percent identity (based on aligned regions): YBEC YVEA Y609 YBAT CAT2 ORFT CTAF YW19 YBEC 0.00 39.05 23.94 20.96 21.59 22.65 22.78 21.93 YVEA 39.05 0.00 26.35 21.63 21.33 26.94 24.15 19.95 Y609 23.94 26.35 0.00 31.91 35.41 23.17 23.53 20.41 YBAT 20.96 21.63 31.91 0.00 31.11 22.39 26.13 21.35 CAT2 21.59 21.33 35.41 31.11 0.00 23.33 23.47 23.56 ORFT 22.65 26.94 23.17 22.39 23.33 0.00 26.62 28.76 CTAF 22.78 24.15 23.53 26.13 23.47 26.62 0.00 25.76 YW19 21.93 19.95 20.41 21.35 23.56 28.76 25.76 0.00 Distance scores for phylogenetic tree: YBEC YVEA Y609 YBAT CAT2 ORFT YW19 CTAF YBEC 0.00 78.16 146.36 155.31 152.41 148.54 162.78 163.32 YVEA 78.16 0.00 137.37 152.92 150.46 138.29 171.70 157.31 Y609 146.36 137.37 0.00 106.76 111.35 128.38 167.06 176.23 YBAT 155.31 152.92 106.76 0.00 126.96 145.51 156.71 176.29 CAT2 152.41 150.46 111.35 126.96 0.00 151.56 158.20 157.88 ORFT 148.54 138.29 128.38 145.51 151.56 0.00 133.19 155.74 YW19 162.78 171.70 167.06 156.71 158.20 133.19 0.00 167.81 CTAF 163.32 157.31 176.23 176.29 157.88 155.74 167.81 0.00 Branching order: (YBEC,YVEA)Y609)YBAT)CAT2)ORFT)YW19)CTAF) Clusters: (Y609,YBAT)CAT2) (ORFT,YW19) A)YBEC YBECBSU.TXT B)YVEA YVEABSU.TXT C)Y609 Y609MJA.TXT D)YBAT YBATECO.TXT E)CAT2 CAT2AFU.TXT F)ORFT ORF1MTH G)YW19 YW19MTU H)CTAF CAT1AFU.TXT Branch lengths: (r1,r2,r3,r4,r5) (r6,r7,........) 40.80 37.36 35.22 49.47 57.29 6.25 59.52 15.25 4.03 56.91 76.28 7.63 87.55 % s.d. (observed vs calculated) = 3.94