-- PROGRESSIVE (similarity) ALIGNMENT -- Blosum62 Sequences are entered in the following order: 1)ORFM ORF1MBA 2)OFSM ORF1SME 3)EUTR EUTPRER 4)EUTZ EUTPZMO ---- Alignment ---- *** (gap penalty = 6) *** ORFM M S E H E S A S L V OFSM M D D T T S A A P E P D R L R L L EUTR M S L S D H A T G K N A G A A G A H H D G A D F H A E D N S Y L E K EUTZ M L S L P I W F S C D Y R K S G K G R V S K M P E K S P K L S ORFM K T L_R P F H V W_A L G_V G I V_L V G_E Y_M G_W_N F T V A K OFSM R V L_G P A H V W_A L G_V G I V_L V G_E Y_M G_W_N F S V G K EUTR R T L_R K G T A G W_V L L A G_L G V S Y V_I S G_D Y_A G_W_N N G L A E EUTZ K T L_S S F H L W_ G_I A V G L V_I S G_E Y_F G_W_S Y G W A T ORFM G G_V L G S L_L A_M L V A G T M Y_V I I S L C A S E_L G S A T K L OFSM G G_M I A G L_M A_C W V A G L L Y_T C V A M I D S E_V T S T V A A EUTR G G_ F G G L_L I A A_V V I A G M Y_L A M V L G M A E_M S S A L P A EUTZ A G_T M G F L_I A_T V I V A A I Y_T S F I F S F T E_L T C S I P Q ORFM A_G_G_P Y D W A R L F I G_P G A A A S V G_L A V Y M E Y I A L E A A_D OFSM A_G_G_Q Y A Q A K H I V G_P L M A F N V G_L F L V M A Y T M L E A A_N EUTR A_G_G_G Y T F A R R A M G_P W G G F A T G_T A I L I E Y S I A P A A_I EUTZ A_G_G_P F A Y S F R A L G_K W G G A I A G_M A T L V E F L F A P P A_I ORFM A_I V V A S I S Q S I F P E L Q V Y P V T L L V I A L L T OFSM A_I T V G F L L D T V A G M Q G Q T G L N Q Q P F I V L A I M F L A EUTR A_T F I G A Y V E S L N L F G I T D G W W V Y L A V Y A I F I EUTZ A_L A I G S Y L N V Q F P S L S P K M A A A C A Y I V F M ORFM F I N Y R G_V V A A L T L N F V L T_M I A_F I A I L A F F F S T A OFSM W L N Y R G_V L A T L T F N L V I T_A I A_F L A I V A L F V S V Q EUTR G I H L T G_A G E A L K A M F I I T_A I A_L V G L V V F A V S A V G L EUTZ A L N I V G_V R I A A T F E L F I T_V A A_I F E L L V F M G V V A P A ORFM F_G I G D I H P E Y L L Q G A L P N G M I G_L F A_A L Q F_ OFSM F_G A S A V P L D F S A I T S D P L P Y G W V G_I V A_S L H F_ EUTR F_D S S N L T D I A V D T S A V G S S S F L P F G L L G_I W A_A V P F_ EUTZ F_S W E Q F L H D G W G V A S H F D I Q A I G G_I F A_A V P F_ ORFM G P W_F Y L_G I E_G_A A M C A_E_E_C K H P_S R A V P_L G Q Q A G M I T OFSM G L W_Y Y L_G I E_G_T C Q A A_E_E_V R S P_A R S L P_Y G T M A G I M T EUTR A I W_F F L_A V E_G_V P L A A_E_E_A R E P_E K N V P_R G I I I S M L I EUTZ A I W_F F L_A I E_G_V A M A A_E_E_A K N P_R R S I P_I A Y T A G I L T ORFM L_L I G A A M T L Y L C S V L I P A D L L_G V S V Y P_L_F E A_A Q N OFSM L_L I A A T M T W Y I C S G L M P W E Y L_G Q A G T P_L_F D A_A R V EUTR L_I V T G A T V L F L A T G A L G A D A L_S T S G N P_L_V E A_L G D EUTZ L_V S L A F G V M V F A G G S M D W H Q L_A N L N D P_L_P Q A_M K H V ORFM S G_V F I F V A L L G L G_T F L T C V A S_A N G C V C D S S R_L L OFSM T G_S T G L M V L L F V G_T A F A T L A S_A N G C I N D A S R_A W EUTR S G_A A K A V N Y I G_L A G L V A S_F F S I M Y A Y S R_Q T EUTZ V G_A H S G W L H M L V F L G_L F G L V S S_L H G I I M G Y G R_Q I ORFM V C S L K R_Q L R V I R F S A V H P K Y N T P_Y R A_V I F T V_ OFSM F S M S R_D R Y L P S W F G A V H P V Y R T P_Y R A_I V F L V_ EUTR F A L S R_A G Y L P K N L S V T N K R K A P_T L A_L V V_ EUTZ F A L A R_A G F L P A T L G K L H I K L Q T P_Y A A_T I A G G L V_ ORFM P V A I G F_A_ F S G Y L D Q V I T F S I V S G L L C Y_V OFSM P I A L I F_A_ L G A P L D Q V V T F S I L S G L L G Y_T EUTR P G I I G F_A_ L S L T G E G A M L L N M A V F G A A V S Y_V EUTZ G I A A I F_A_D D V L S F G G H S L T A I L V T M S V L G S L T M Y_V ORFM L I P F S L I R F R_K L F P_E T T S K V R_P F V G P_L Q P Y I A Y F A OFSM F M T F N M V M F R_N K W P_L G R I K R_G Y V H P_F H P L P T V V L EUTR L M M V S H I V L R_K R E P_ N M P R_P Y R T P_G G I A T T S F A EUTZ L S M V S L F R L R_Q T M P_ D L P R_P Y K A P_L Y P F L P A L A ORFM I A I A I T I L S T L F W G Y K Y N L I F A F V S T V L R T S I S A T OFSM L I L C S T A Y F A V F L G Y G T Q L S A M EUTR L V I A A V S V V A T F L V D P V A A L EUTZ L I G A F F L L A A V I Y Y N A G I S F I ORFM N T R N Q T L K I T G L K W A G P Y P K A R E I E R S R R R Q L A L E OFSM M C F Y I V A S L W F H F R R EUTR L T L V A F G V L M A Y F EUTZ Y A L L M C I A C P L C L Y S ORFM T N D Q A L E S K Y H S K L T G D T A L V V G M L A L L I C V E G F OFSM Y K F V R R G D Q EUTR G L Y S R H H L V A N S P D E E F A V EUTZ Y K R S Q N K K T E E N D I ORFM I A Y K I L S E T W E I A S G F F Y L Y V I F I G L I V L I E T I G C OFSM F T M P W P EUTR L A Q A EUTZ T T S A ORFM L K V R E S I K T H M F E F K Y Y D OFSM K P H G Y EUTR E E E L G EUTZ I L A A E G A E E -- Results -- Length of sequences with gaps = 613 Average sequence length: 499 Percent identity (based on aligned regions): ORFM OFSM EUTR EUTZ ORFM 0.00 44.77 32.88 27.52 OFSM 44.77 0.00 28.15 28.60 EUTR 32.88 28.15 0.00 33.33 EUTZ 27.52 28.60 33.33 0.00 Distance scores for phylogenetic tree: ORFM OFSM EUTR EUTZ ORFM 0.00 87.75 128.67 142.06 OFSM 87.75 0.00 118.86 126.55 EUTR 128.67 118.86 0.00 110.18 EUTZ 142.06 126.55 110.18 0.00 Branching order: (ORFM,OFSM)EUTR)EUTZ) Clusters: (EUTR,EUTZ) A)ORFM ORF1MBA B)OFSM ORF1SME C)EUTR EUTPRER D)EUTZ EUTPZMO Branch lengths: (r1,r2,r3,r4,r5) (r6,r7,........) 50.21 37.55 30.07 49.82 60.36 % s.d. (observed vs calculated) = 0.99